Deep Life
Novel Organisms
It's Slow Growing: Novel Approaches
Global Implications
Science & Technology
Training & Outreach
Message from the Managing Director:
Being a part of C-DEBI has been a huge part of my life. I truly enjoyed getting to know so many of you and supporting the framework for moving deep biosphere research and education programs forward in our Center’s 12 years. As C-DEBI comes to an end officially at the end of September, there are various transitions happening at the same time. As many of you know, I have joined the COBRA-AccelNet team (with overlapping C-DEBI Leadership by Beth Orcutt, Julie Huber, Andy Fisher and Geoff Wheat), so after C-DEBI ends, you can find me on the Bigelow Laboratory staff. In the meantime, I’ll be wrapping up C-DEBI after my upcoming maternity leave starting in mid-August. This won’t be our last communication, but with all these moving parts, there will be a few newsletters on hiatus.
To keep those of you interested in the deep biosphere engaged in the future, we will be migrating all on the C-DEBI newsletter to the COBRA newsletter where we will share similar content related to the crustal biosphere monthly. If you aren’t interested, unsubscribe when you receive the first newsletter in the next month.
Hope to cross paths with you again someday, somewhere!
Rosalynn Sylvan
C-DEBI Managing Director
Message from the Managing Director:
Being a part of C-DEBI has been a huge part of my life. I truly enjoyed getting to know so many of you and supporting the framework for moving deep biosphere research and education programs forward in our Center’s 12 years. As C-DEBI comes to an end officially at the end of September, there are various transitions happening at the same time. As many of you know, I have joined the COBRA-AccelNet team (with overlapping C-DEBI Leadership by Beth Orcutt, Julie Huber, Andy Fisher and Geoff Wheat), so after C-DEBI ends, you can find me on the Bigelow Laboratory staff. In the meantime, I’ll be wrapping up C-DEBI after my upcoming maternity leave starting in mid-August. This won’t be our last communication, but with all these moving parts, there will be a few newsletters on hiatus.
To keep those of you interested in the deep biosphere engaged in the future, we will be migrating all on the C-DEBI newsletter to the COBRA newsletter where we will share similar content related to the crustal biosphere monthly. If you aren’t interested, unsubscribe when you receive the first newsletter in the next month.
Hope to cross paths with you again someday, somewhere!
Rosalynn Sylvan
C-DEBI Managing Director
Thank you to all for being a part of C-DEBI through the Virtual Meeting Series. C-DEBI nurtured a community of deep biosphere experts, and that expertise is urgently needed to inform new emerging uses of the deep sea, especially in the rocky parts of the deep sea, such as potential removal of rocks for industrial mineral interests or using the deep sea as a repository for carbon dioxide to address global warming. This has led to the initiation of the COBRA program, a new research coordination network with the mission to accelerate the research on these types of topics, so that scientists can inform decision making. Sign up for the COBRA newsletter to stay connected to the webinar series launching soon as part of the COBRA mission to help with coordination, knowledge sharing and training of all of us who care about microbes in the deep sea with policymakers.
Message from the Director:
We enjoyed a final, final Annual Meeting in person last month in Marina, CA with great talks and discussions amongst the company of friends and colleagues we’ve interacted with over a decade of C-DEBI. Thank you to each and every one of the nearly 1000 participants who has contributed to the success of the Center’s research, education, outreach, diversity, and knowledge transfer!
Coming up Friday at 9:30-11AM Pacific is our last Virtual Meeting Series event of the year with Ivona Cetinič (NASA Goddard): How to Better Prepare Participants and Mentors for Preventing/Addressing Sexual Harassment in the Field.
Happy holidays and best wishes for the new year!
Cheers,
Jan Amend
C-DEBI Director
Authors: Man-Yin Tsang, Fumio Inagaki
Below the seafloor are trillions of single-celled microbial life. Marine sediments bury these microorganisms deeper and deeper. Meanwhile, the microorganisms face increasing pressures and temperatures and reduced amounts of food and water. Although they are living in difficult conditions, these microorganisms stay alive and maintain their communities. To date, we know that these microbial communities can survive for millions of years, at 2.5 km below the seafloor, and at temperatures over 100°C. Scientists use multiple approaches to study these fascinating microorganisms.
The Integrative Programs Section within the Division of Ocean Sciences (OCE) in the Directorate of Geosciences (GEO) announces a nationwide search for a Program Director (Rotator) with experience and expertise in the general fields of marine geology, marine geophysics, paleoceanography, marine geochemistry, marine geobiology, or scientific ocean drilling. The Ocean Drilling Program (ODP) provides oversight of the award supporting operations of the JOIDES Resolution drillship facility, the primary U.S. contribution to the International Ocean Discovery Program (IODP). The Program Director’s core duties and responsibilities will be assisting in administering the current ODP awards and in assisting the provision of leadership and coordination in IODP and other U.S. and international scientific ocean drilling efforts, as well as in coordinating and working with other programs in NSF and other Federal agencies and organizations.
The Rosenstiel School in Marine and Atmospheric Science at the University of Miami (UM) seeks to expand its vibrant intellectual community through inviting applications within a cluster hiring initiative to appoint up to five tenured or tenure-track faculty members, one per Department, who meet the following qualifications: Faculty who would bring visibility, renown, and additional impact to any of the five individual RSMAS Departments in Atmospheric Sciences, Ocean Sciences, Marine Geosciences, Marine Biology and Ecology, or Environmental Science and Policy; Faculty who would add to the long-standing goal of increasing diversity across our departments. Applications will be considered at the Assistant Professor, Associate Professor, and Professor ranks.
The Earth and Environmental Science Jobs List is now co-hosted by the Earth Science Women’s Network! This crowd-sourced list includes pages for Tenure Track/Permanent jobs, Non-Tenure Track Faculty, and Postdoc positions. Graduate student positions are co-moderated by Geoscience Education Mentoring Support (GEMS).
Water-rock reactions supporting the deep subsurface biosphere by producing electron donors and acceptors in the subsurface have been identified, from serpentinization (mineral hydration reactions), to radiogenic reactions. In the Stable Isotope Laboratory of Dr. Barbara Sherwood Lollar, this project focuses on the potential for a radiolytically driven H, S, and C deep cycle in the Earth’s subsurface, and the reaction mechanisms and rates sustaining deep subsurface microorganisms in the absence of interaction with the surface photosphere. The Earth-based focus on this work will have direct relevance for models of planetary habitability capable of sustaining subsurface chemolithotrophic life on planets or moons where photosynthesis may never have arisen. Field, laboratory and modelling opportunities are available to extend the existing program to explore the implications of our work on Earth analogs to the search for life on the rocky bodies and ocean worlds of our solar system.
Did you miss the last VMS on The Many Ways to Use Anvi’o, a Platform for Microbial ‘Omics? Check out the recording with invited speaker Iva Veseli (University of Chicago) as she introduces Anvi’o, a community-driven software platform enabling integrated analyses and interactive visualization of multi-’omic data, and discusses the various ways to learn and use anvi’o, and how these strategies fit different research needs and users with different levels of computational experience.
Did you miss the last VMS on Sampling Oceanic Crustal Fluids: Some Options? Check out the recording with invited speakers Rika Anderson (Carleton College), Julie Huber (Woods Hole Oceanographic Institution), Susan Lang (University of South Carolina), and Michael Rappé (University of Hawaii) as they discuss the many different types of samplers including those available for sampling hydrothermal fluids with submersibles, and the costs and benefits of the different approaches.
Steve D’Hondt is Professor of Oceanography at the University of Rhode Island. He studies life beneath the sea floor, and was a part of the team that discovered bacterial cells living in 100-million-year-old sediment. He explains how the bacteria managed to eke out a living for such a long time with barely any access to nutrients.
Hydrothermal vent fluids from the Gorda Ridge spreading center in the Pacific Ocean create a biological hub of activity in the deep sea. There in the dark ocean, a unique food web thrives not on photosynthesis but on chemical energy from the venting fluids. Among the creatures having a field day is a diverse assortment of microbial eukaryotes, or protists, that graze on chemosynthetic bacteria and archaea. This protistan grazing, a key mechanism for carbon transport and recycling in microbial food webs, exerts a higher predation pressure at hydrothermal vent sites than in the surrounding deep-sea environment, a U.S. National Science Foundation-funded paper reports. “Our findings provide a first estimate of protistan grazing pressure in hydrothermal vent food webs, highlighting the important role diverse protistan communities play in deep-sea carbon cycling,” according to the paper in Proceedings of the National Academy of Sciences.
There’s a mystery hiding deep beneath our feet. If you dig down past the tree roots and house foundations, past the water table and the fossilized bones, through layers of rock and ore, you’ll eventually reach a boundary. Here, the Earth’s crust — the rock we live our lives on — transitions into the denser rock of the Earth’s mantle. This boundary is the Mohorovičić discontinuity, or “Moho” for short. And no one knows for sure what this boundary looks like, or what lies there. Hear more in the Unexplainable podcast episode “Journey Toward the Center of the Earth” with Byrd Pinkerton.
In this BBC Earth Podcast, we’re exploring the parts of our world that require us to look a little deeper. From the depths of our oceans to the canopies that grace our skylines, we’ll be venturing into unfamiliar pockets of nature with the people who have carved a life out of choosing to study the things that many of us can’t see. We also travel to the bottom of the ocean, and discover how even in the most extreme environments fragments of life persist. What can this alien environment teach us about life’s limits and extraordinary capabilities? C-DEBIer James Bradley talks about the deep biosphere and the findings of his recent Science Advances paper.
The evidence mounts that bacteria can be effectively immortal. Featuring the Integrated Ocean Drilling Program’s Expedition 329 to the South Pacific Gyre. By Jennifer Frazer on March 4, 2021.
The U.S. Science Support Program sponsors Pre-Drilling Activities to provide funds in quick response to an opportunity to acquire data or information that will enhance a drilling expedition. Priority is given to projects that support expeditions already on the ship’s schedule. The definition of this activity is deliberately flexible to allow consideration of exceptional or unusual requests for drill site data enhancement.
Within the Directorate for Geosciences (GEO), the Division of Ocean Sciences supports research, infrastructure, and education to advance understanding of all aspects of the global oceans and ocean basins, including their interactions with people and the integrated Earth system. These activities provide knowledge critical to addressing many of our nation’s most pressing challenges involving earth processes. OCE supports and promotes collaboration and facilitates development of a diverse scientific and educational community, including international efforts. The Division works with the U.S. ocean sciences academic community to direct funding towards advancing the frontiers of knowledge, developing the next generation of researchers, and enhancing the public’s understanding of ocean sciences. The Division represents this community in the Federal context, coordinates with other Federal agencies and with international partners on research funding and infrastructure management, and participates in development of policy through national and international forums and programs.
The goal of NASA’s Exobiology program (formerly Exobiology and Evolutionary Biology) is to understand the origin, evolution, distribution, and future of life in the Universe. Research is centered on the origin and early evolution of life, the potential of life to adapt to different environments, and the implications for life elsewhere. This research is conducted in the context of NASA’s ongoing exploration of our stellar neighborhood and the identification of biosignatures for in situ and remote sensing applications.
The Directorate for Geosciences (GEO) supports the Pathways into the Geosciences – Earth, Ocean, Polar and Atmospheric Sciences (GEOPAths) funding opportunity. GEOPAths invites proposals that specifically address the current needs and opportunities related to education, learning, training and professional development within the geosciences community through the formation of STEM Learning Ecosystems that engage students in the study of the Earth, its oceans, polar regions and atmosphere. The primary goal of the GEOPAths funding opportunity is to increase the number of students pursuing undergraduate and/or postgraduate degrees through the design and testing of novel approaches that engage students in authentic, career-relevant experiences in geoscience. In order to broaden participation in the geosciences, engaging students from historically excluded groups or from non-geoscience degree programs is a priority.
The primary goal of the UNOLS Cruise Opportunity Program is to provide graduate students currently completing (or who have recently completed) a degree in a field of oceanographic research with the opportunity to participate in a research cruise. The participant will be a member of the scientific party and be involved in data collection and all other activities at sea. It is envisioned that the individual will be familiar with the science to be conducted at sea, and thus, form new collaborations and potentially develop new research directions. To be eligible to participate in this program, the individual must be either currently be studying at a U.S.-based institution or a recent graduate, and must have either a U.S. Passport or a U.S. Work Visa. Please note that you are responsible for paying for your travel to/from the ship (unless otherwise noted), and at this time the UNOLS Office is unable to provide travel funds; however your advisor or institution may have some ideas.
Putative alkaline hydrothermal systems on Noachian Mars were potentially habitable environments for microorganisms. However, the types of reactions that could have fueled microbial life in such systems and the amount of energy available from them have not been quantitatively constrained. In this study, we use thermodynamic modeling to calculate which catabolic reactions could have supported ancient life in a saponite-precipitating hydrothermal vent system in the Eridania basin on Mars. To further evaluate what this could mean for microbial life, we evaluated the energy potential of an analog site in Iceland, the Strytan Hydrothermal Field. Results show that, of the 84 relevant redox reactions that were considered, the highest energy-yielding reactions in the Eridania hydrothermal system were dominated by methane formation. By contrast, Gibbs energy calculations carried out for Strytan indicate that the most energetically favorable reactions are CO2 and O2 reduction coupled to H2 oxidation. In particular, our calculations indicate that an ancient hydrothermal system within the Eridania basin could have been a habitable environment for methanogens using NH4+ as an electron acceptor. Differences in Gibbs energies between the two systems were largely determined by oxygen—its presence on Earth and absence on Mars. However, Strytan can serve as a useful analog for Eridania when studying methane-producing reactions that do not involve O2.
‘Candidatus Methanophagales’ (ANME-1) is an order-level clade of archaea responsible for anaerobic methane oxidation in deep-sea sediments. The diversity, ecology and evolution of ANME-1 remain poorly understood. In this study, we use metagenomics on deep-sea hydrothermal samples to expand ANME-1 diversity and uncover the effect of virus–host dynamics. Phylogenetic analyses reveal a deep-branching, thermophilic family, ‘Candidatus Methanospirareceae’, closely related to short-chain alkane oxidizers. Global phylogeny and near-complete genomes show that hydrogen metabolism within ANME-1 is an ancient trait that was vertically inherited but differentially lost during lineage diversification. Metagenomics also uncovered 16 undescribed virus families so far exclusively targeting ANME-1 archaea, showing unique structural and replicative signatures. The expansive ANME-1 virome contains a metabolic gene repertoire that can influence host ecology and evolution through virus-mediated gene displacement. Our results suggest an evolutionary continuum between anaerobic methane and short-chain alkane oxidizers and underscore the effects of viruses on the dynamics and evolution of methane-driven ecosystems.
Low-chlorinity springs sampled from ten sites on nine serpentinite mud volcanoes show systematic chemical gradients across the outer Mariana forearc that result from progressive devolatilization of the subducting Pacific plate. Sites range from 50 to 90 km from the trench axis corresponding to depths to the top of the plate of ∼15–29 km. Dissolved sulfate, Na/Cl, K, Rb, Cs, and B in the springs all increase regularly with distance from the trench, leached from subducting sediment and altered basalt in response to increasing temperature at depth from ∼80 to 350 °C. Sites nearer the trench have high Ca (up to 76 mmol/kg) and Sr, low alkalinity, and pH 10.7, whereas sites farther from the trench have almost no Ca and Sr, alkalinity (some carbonate but mostly hydroxyl) as high as 69 meq/kg, and pH 12.5. Springs with high alkalinity also have high methane (>44 mmol/kg) that feeds sulfate-reducing archaeal communities in the shallow subsurface and macrofauna at the seafloor. These distal springs form chimneys and crusts of CaCO3, whereas the proximal springs form chimneys of brucite. High alkalinity at the distal sites apparently results from carbonate dissolution at the top of the subducting plate; because serpentinization during ascent generates both high pH and H2, the resulting dissolved carbonate is reduced to methane such that carbonate alkalinity is replaced by hydroxyl alkalinity: 4H2 + HCO3– → CH4 + 2H2O + OH–. This reaction can account for the much higher pH of the distal springs. Chlorinity of the springs varies from 234 to 546 mmol/kg and is related to latitude N–S rather than distance from the trench. Distal springs have otherwise similar compositions over this entire range of chlorinity, implying that chloride derives from depth rather than from mixing with seawater within the seamounts themselves. The range in chlorinity can readily be explained by serpentinization at reasonable water/rock mass ratios of 0.2–1.0 if 30–40% of the spring water originates as residual pore water in subducted sediment and basalt rather than as H2O+ of dehydration.
The pH, alkalinity, and methane content of the springs increase abruptly, while Ca and Sr decrease, because carbonate dissolution joins dehydration as a major process at the top of the subducting plate at ∼70 km from the trench, where metabasites recovered from the serpentinite mud indicate the transition from lawsonite blueschist facies to epidote blueschist facies also occurs. Replacement of lawsonite by epidote drastically depletes the solution in Ca and shifts the equilibrium toward massive dissolution of subducted carbonate. Fluxes of sulfate, C, Na, K, Rb, Cs, B, Ca, and Sr in the forearc springs represent only a few percent of the amounts subducted, consistent with continued supply at greater depth.
Quantifying the organic carbon (OC) sink in marine sediments is crucial for assessing how the marine carbon cycle regulates Earth’s climate. However, burial efficiency (BE) – the commonly-used metric reporting the percentage of OC deposited on the seafloor that becomes buried (beyond an arbitrary and often unspecified reference depth) – is loosely defined, misleading, and inconsistent. Here, we use a global diagenetic model to highlight orders-of-magnitude differences in sediment ages at fixed sub-seafloor depths (and vice-versa), and vastly different BE’s depending on sediment depth or age horizons used to calculate BE. We propose using transfer efficiencies (Teff’s) for quantifying sediment OC burial: Teff is numerically equivalent to BE but requires precise specification of spatial or temporal references, and emphasizes that OC degradation continues beyond these horizons. Ultimately, quantifying OC burial with precise sediment-depth and sediment-age-resolved metrics will enable a more consistent and transferable assessment of OC fluxes through the Earth system.
Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from four geographically- and geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. The four vent fields include Axial Seamount at the Juan de Fuca Ridge, Sea Cliff and Apollo at the Gorda Ridge, all in the NE Pacific Ocean, and Piccard and Von Damm at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. At a semi-global scale, microbial eukaryotic communities at deep-sea vents were composed of similar proportions of dinoflagellates, ciliates, Rhizaria, and stramenopiles. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. These findings represent a census of deep-sea hydrothermal vent protistan communities. Protistan diversity, which is shaped by the hydrothermal vent environment at a local scale, ultimately influences the vent-associated microbial food web and the broader deep-sea carbon cycle.
Meet the 2020 summer line up for the Summer OnLine Interactive/Discussion Global Environmental Microbiology (SOLID-GEM) course. We are proud to have been a step in their scientific pathway. Learn more about the GEM course.
Meet the 2019 summer line up for the Global Environmental Microbiology course. We are proud to have been a step in their scientific pathway. Learn more about the GEM course.
Meet the 2018 summer line up for the Global Environmental Microbiology course. We are proud to have been a step in their scientific pathway. Learn more about the GEM course.
Meet the 2018 summer line up for the Community College Cultivation Cohort (C4) REU. We are proud to have been a step in their scientific pathway. Learn more about the C4 REU.
C-DEBI was a National Science Foundation Science and Technology Center led by Drs. Jan Amend (C-DEBI Director, USC), Julie Huber (Marine Biological Laboratory), Steven D’Hondt (University of Rhode Island), Andrew Fisher (University of California, Santa Cruz), and C. Geoffrey Wheat (University of Alaska, Fairbanks).
In partnership with C-DEBI, Delaware Sea Grant expanded its collection of 15 Second Science videos and other multimedia to include resources about the deep biosphere and sub-seafloor life.