{"id":15976,"date":"2020-11-01T20:58:59","date_gmt":"2020-11-02T04:58:59","guid":{"rendered":"https:\/\/www.darkenergybiosphere.org\/?post_type=publication&#038;p=15976"},"modified":"2020-11-15T14:16:18","modified_gmt":"2020-11-15T22:16:18","slug":"supersized-ribosomal-rna-expansion-segments-in-asgard-archaea","status":"publish","type":"publication","link":"https:\/\/www.darkenergybiosphere.org\/publication\/supersized-ribosomal-rna-expansion-segments-in-asgard-archaea\/","title":{"rendered":"Supersized Ribosomal RNA Expansion Segments in Asgard Archaea"},"content":{"rendered":"<p>The ribosome\u2019s common core, comprised of ribosomal RNA (rRNA) and universal ribosomal proteins, connects all life back to a common ancestor and serves as a window to relationships among organisms. The rRNA of the common core is similar to rRNA of extant bacteria. In eukaryotes, the rRNA of the common core is decorated by expansion segments (ESs) that vastly increase its size. Supersized ESs have not been observed previously in Archaea, and the origin of eukaryotic ESs remains enigmatic. We discovered that the large ribosomal subunit (LSU) rRNA of two Asgard phyla,\u00a0<em>Lokiarchaeota<\/em>\u00a0and\u00a0<em>Heimdallarchaeota<\/em>, considered to be the closest modern archaeal cell lineages to Eukarya, bridge the gap in size between prokaryotic and eukaryotic LSU rRNAs. The elongated LSU rRNAs in\u00a0<em>Lokiarchaeota<\/em>\u00a0and\u00a0<em>Heimdallarchaeota<\/em>\u00a0stem from two supersized ESs, called ES9 and ES39. We applied chemical footprinting experiments to study the structure of\u00a0<em>Lokiarchaeota<\/em>\u00a0ES39. Furthermore, we used covariation and sequence analysis to study the evolution of Asgard ES39s and ES9s. By defining the common eukaryotic ES39 signature fold, we found that Asgard ES39s have more and longer helices than eukaryotic ES39s. Although Asgard ES39s have sequences and structures distinct from eukaryotic ES39s, we found overall conservation of a three-way junction across the Asgard species that matches eukaryotic ES39 topology, a result consistent with the accretion model of ribosomal evolution.<\/p>\n","protected":false},"template":"","tags":[],"publication_type":[19],"_links":{"self":[{"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/publication\/15976"}],"collection":[{"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/publication"}],"about":[{"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/types\/publication"}],"wp:attachment":[{"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/media?parent=15976"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/tags?post=15976"},{"taxonomy":"publication_type","embeddable":true,"href":"https:\/\/www.darkenergybiosphere.org\/wp-json\/wp\/v2\/publication_type?post=15976"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}