URLhttps://www.bco-dmo.org/dataset/805216
Download URLhttps://www.bco-dmo.org/dataset/805216/data/download
Media Type text/tab-separated-values
Created March 2, 2020
Modified July 2, 2020
State Final no updates expected

Acquisition Description

Location:

Arctic Ocean: P-1-94-AR P21, 84o5' N, 174o58' W
California margin: W-2-98-NC TF1, 41o5' N, 125o1' W
Equatorial Pacific: TT013-06MC, 12o00' S, 134o56' W

Methodology:

Solid sediment samples were transferred to two 50 mL centrifuge tubes (2 sample replicates combined per tube). We added 20 mL of 0.25 M NaOH + 0.05 M Na2EDTA solution to each tube, vortexed until all sediment was resuspended and then shook samples for 6 h at room temperature (Cade-Menun et al. 2005). We used a solid to solution ratio of 1:5 for this step to minimize the amount of freeze-dried material that will need to be dissolved for the 31P NMR experiments. Large amounts of salts from the NaOH-EDTA concentrated in NMR samples lead to higher viscosity and increase line broadening on NMR spectra (Cade-Menun and Liu 2013). We chose an extraction time of 6 h to improve total P recovery while limiting the degradation of natural P compounds in the sample. At the end of the extraction, samples were centrifuged at 3,700 rpm for 15 min and supernatants decanted into 50 mL centrifuge tubes. We collected a 500 μL aliquot from each sample, which we diluted with 4.5 mL of ultrapure water. These were refrigerated until analysis for total P content on the ICP-OES. The sample residues and supernatants were frozen on a slant to maximize the exposed surface area during the lyophilization step; this was done immediately after the removal of the 500 μL aliquot. Once completely frozen, the uncapped tubes containing supernatants and residues were freeze-dried over the course of 48 h. Each tube was covered with parafilm with small holes from a tack to minimize contamination. Freeze-dried supernatants from identical sample splits were combined and dissolved in 500 μL each of ultrapure water, D2O, NaOH-EDTA and 10 M NaOH prior to 31P NMR analysis. The D2O is required as signal lock in the spectrometer (Cade-Menun and Liu 2013). Sample pH was maintained at a pH > 12 to optimize peak separation (Cade-Menun 2005; Cade-Menun and Liu 2013). Sample pH was assessed with a glass electrode, and verified with pH paper to account for the alkaline error caused by the high salt content of our samples (Covington 1985).

Total P and metal concentrations in sediment extracts were measured using inductively coupled plasma optical emission spectroscopy (ICP-OES). Standards were prepared with the same solutions as those used for the extraction procedure in order to minimize matrix effects on P measurements. Sediment extracts and standards (0 μM, 3.2 μM, 32 μM and 320 μM) were diluted to lower salt content to prevent salt buildup on the nebulizer. Concentration data from both wavelengths (213 nm and 214 nm) were averaged to obtain extract concentrations for each sample. The detection limit for P on this instrument for both wavelengths is 0.4 μM.

Freeze-dried sample residues were ashed in crucibles at 550oC for 2 h and then extracted in 25 mL of 0.5 M sulfuric acid for 16 h (Olsen and Sommers 1982; Cade-Menun and Lavkulich 1997). We centrifuged samples at 3,700 rpm for 15 min, filtered supernatants with 0.4 μm polycarbonate filters, and measured P content on an ICP-OES.

Processing Description

Data were processed in Excel.

BCO-DMO Data Manager Processing Notes:
* Data from originally submitted Excel file Data_TP+metals_sediments with no pretreatment_v2.xlsx in sheets "NMR extract" and "Residue" were exported as csv.
* Column "Type" added with values "NMR extract" or "Residue", then the data form the two sheets were combined into one table.
* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions
* blank values in this dataset are displayed as "nd" for "no data." nd is the default missing data identifier in the BCO-DMO system.

Instruments

QuikChem 8000 automated ion analyzer [Flow Injection Analyzer]
Details
An instrument that performs flow injection analysis. Flow injection analysis (FIA) is an approach to chemical analysis that is accomplished by injecting a plug of sample into a flowing carrier stream. FIA is an automated method in which a sample is injected into a continuous flow of a carrier solution that mixes with other continuously flowing solutions before reaching a detector. Precision is dramatically increased when FIA is used instead of manual injections and as a result very specific FIA systems have been developed for a wide array of analytical techniques.

Parameters

Details
Type
Type (NMR extract or Residue)
text description of sample collected
Extract [sample_descrip]
Details
Extract
Extraction solution
text description of sample collected
Dilution [treatment]
Details
Dilution
Sample dilution or "None"

Experimental conditions applied to experimental units.  In comparative experiments, members of the complementary group, the control group, receive either no treatment or a standard treatment.

Sample_ID [sample]
Details
Sample_ID
Unique sample identifier

unique sample identification or number; any combination of alpha numeric characters; precise definition is file dependent

Analyte_Name [sample_descrip]
Details
Analyte_Name
Element analyzed
text description of sample collected
Int_Corr [unknown]
Details
Int_Corr
Intensity (corrected)
association with a community-wide standard parameter is not yet defined
RSD_Corr_Int [standard deviation]
Details
RSD_Corr_Int
Relative standard deviation
Generic standard deviation value, taking on the units of the parameter that it is tied to.
Conc_Calib [P]
Details
Conc_Calib

Calibrated concentration of total phosphorous

P (Phosphorus). May be reported in parts per million, nanomoles per liter, or other units. Refer to dataset metadata for units.

Dataset Maintainers

NameAffiliationContact
Adina PaytanUniversity of California-Santa Cruz (UC Santa Cruz)
Delphine DefforeyUniversity of California-Santa Cruz (UC Santa Cruz)
Amber YorkUniversity of California-Santa Cruz (UC Santa Cruz)
Amber YorkUniversity of California-Santa Cruz (UC Santa Cruz)
Amber YorkWoods Hole Oceanographic Institution (WHOI BCO-DMO)

BCO-DMO Project Info

Project Title A new marine sediment sample preparation scheme for solution 31P NMR analysis
Acronym Marine Sediment Analysis 31P NMR
URLhttps://www.bco-dmo.org/project/664054
Created November 7, 2016
Modified February 27, 2020
Project Description

We developed and tested a new approach to prepare marine sediment samples for solution 31P nuclear magnetic resonance spectroscopy (31P NMR). This approach addresses the effects of sample pretreatment on sedimentary P composition and increases the signal of low abundance P species in 31P NMR spectra by removing up the majority inorganic P  from sediment samples while causing minimal alteration of the chemical structure of organic P compounds. The method was tested on natural marine sediment samples from different localities (Equatorial Pacific, California Margin and Arctic Ocean) with high inorganic P content, and allowed for the detection of low abundance P forms in samples for which only an orthophosphate signal could be resolved with an NaOH-EDTA extraction alone. This new approach will allow the use of 31P NMR on samples for which low organic P concentrations previously hindered the use of this tool, and will help answer longstanding question regarding the fate of organic P in marine sediments. We developed and tested a new approach to prepare marine sediment samples for solution 31P nuclear magnetic resonance spectroscopy (31P NMR). This approach addresses the effects of sample pretreatment on sedimentary P composition and increases the signal of low abundance P species in 31P NMR spectra by removing up the majority inorganic P  from sediment samples while causing minimal alteration of the chemical structure of organic P compounds. The method was tested on natural marine sediment samples from different localities (Equatorial Pacific, California Margin and Arctic Ocean) with high inorganic P content, and allowed for the detection of low abundance P forms in samples for which only an orthophosphate signal could be resolved with an NaOH-EDTA extraction alone. This new approach will allow the use of 31P NMR on samples for which low organic P concentrations previously hindered the use of this tool, and will help answer longstanding question regarding the fate of organic P in marine sediments. 

NSF C-DEBI Award #156246 to Dr. Adina Paytan

NSF C-DEBI Award #157598 to Dr. Delphine Defforey 

Data Project Maintainers
NameAffiliationRole
Adina PaytanUniversity of California-Santa Cruz (UC Santa Cruz)Principal Investigator
Delphine DefforeyUniversity of California-Santa Cruz (UC Santa Cruz)Co-Principal Investigator
Barbara J. Cade-MenunAgriculture and Agri-Food Canada (AGR GC)Co-Principal Investigator
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